Public Health EHR Software for Health Departments & Community Health Organizations
Juno EHR for Public Health is purpose-built for the needs of public health agencies, including state and county health departments and federally qualified health centers (FQHCs). Our cloud-native EHR is designed to support smarter workflows and streamline documentation so you can care for your community the best way you know how—from monitoring population health to tracking immunizations to meeting compliance standards.
FOR CLINICIANS & CARE TEAMS
Document quickly and accurately to get back to patient care. Configurable templates for public health workflows help maintain accurate patient records and nonmedical drivers of health (NMDOH) data to inform every interaction. Coming soon: Chart Review will also improve health tracking and clinical documentation inside Juno EHR. Reap the benefits of enhanced clinical decision support. Juno EHR for Public Health enables population health alerts, streamlines medication inventory management across multiple clinic locations, and even has patient alert options for follow-up care.
FOR IT & HEALTH INFORMATICS
Meet technical standards with a cloud-based solution that incorporates HL7 FHIR-based APIs. Juno EHR's open architecture ensures seamless data sharing with state registries, health information exchanges (HIEs), First Databank Cloud Connector, and prescription drug monitoring programs (PDMPs) to meet ONC certification requirements. IT and informatics teams can access standardized data, clinical photos, and powerful visual data reporting for population health analytics.
Configure standardized workflows for medication administration, pharmacy distribution, and more with a flexible code set that lets your team make in-house updates and changes without waiting on a vendor. You can even boost security with role-based access, location-specific permissions, audit trails, and multilevel confidentiality. And because of Juno EHR’s single-tenant architecture, your agency is never dependent on another organization.
FOR ADMINISTRATORS & EXECUTIVES
Reduce compliance overhead and streamline paperwork. Juno EHR gives administrators access to real-time dashboards and data to make updates without vendor dependence; plus, it standardizes workflows across locations for operational consistency. Reduce the administrative headaches of constant paperwork by integrating digital forms, including HIPAA compliance and digital consent management, and enhance patient engagement with a customizable patient portal. You can even track county, state, and federal funding at the program level, tying every dollar to specific costs and outcomes.

ONC Certified for Trusted Performance
As ONC-certified, HIPAA-compliant, and SOC 2-audited software, Juno EHR reduces compliance risks for public health agencies navigating federal reporting mandates, government procurement requirements, and multiagency data sharing. Keep your agency’s data fully independent inside Juno EHR’s single-tenant environment.
Meet Your Public Health Reporting Mandates
Reporting is often inconsistent. Juno EHR for Public Health supports disease tracking, including case monitoring and syndromic surveillance, to understand patterns. The integrated HL7 FHIR API connects to integrated disease systems and electronic case reporting so you can stay ahead of outbreak detection requirements.
Break Down Data Silos Across Agencies
Support diverse communities statewide. Juno EHR syncs with immunization registries, HIEs, and population health platforms to give real-time insights. Share data across agencies and use predictive analytics to automate risk stratification—from one platform. Juno EHR's end-to-end vaccine management improves community protection with VFC/317 compliance and temperature monitoring.
Streamline Your Case Management
Chronic diseases require ongoing support. Juno EHR streamlines case management by connecting clinical data—vitals, medications, and labs—with social services to support NMDOH needs. Give your team the tools to improve medication adherence, reduce unnecessary ER visits, and achieve better overall patient outcomes.
Customize Your Reporting
Data inconsistencies across facilities prevent accurate reporting. Juno EHR captures structured data to understand trends and quality metrics. Track public health KPIs, chronic disease prevalence, and community needs inside custom dashboards and report builders, and export data directly to state and federal portals.
Ready to Modernize Your Public Health EHR?
Juno Health partners with state health departments and is equipped to support public health agencies and FQHCs of every size by replacing outdated systems with a purpose-built EHR that meets compliance requirements. Enhance workflows with intuitive documentation, improve care coordination via real-time data, and enjoy more meaningful patient interactions.
Ready to Modernize Your Public Health EHR?
Juno Health partners with state health departments and is equipped to support public health agencies and FQHCs of every size by replacing outdated systems with a purpose-built EHR that meets compliance requirements. Enhance workflows with intuitive documentation, improve care coordination via real-time data, and enjoy more meaningful patient interactions.
Public Health EHR Software Built for Government and Community Care
Public health agencies safeguard communities, operating at the intersection of clinical care and regulatory compliance. Commercial EHRs weren’t built to handle all of this.
Juno EHR is tailor-made for public health, supporting clinician workflows, care coordination, and health monitoring across state health departments and FQHCs. Manage population health through disease surveillance and immunizations, enhance maternal and child health, and monitor environmental health and emergency preparedness for your community. Juno EHR supports the full range of programs your agency delivers.
STATE & COUNTY HEALTH DEPARTMENTS
Standardize workflows and centralize reporting across regional offices, local county health departments, and public health clinics statewide.
FEDERALLY QUALIFIED HEALTH CENTERS (FQHCS)
Meet Uniform Data System (UDS) reporting requirements and manage high-volume, complex patient populations without sacrificing workflow speed.
GOVERNMENT MENTAL HEALTH SYSTEMS
Integrate behavioral health and public health documentation for mental health authorities.
PUBLIC HEALTH CLINICS
Manage health programs and initiatives with a flexible, scalable EHR for public health organizations.
How can a public health EHR help agencies?
A public health EHR is designed to support the agencies devoted to the broader community, not only enabling individualized clinical care but also monitoring health trends that impact everyone. Streamline regulatory reporting, disease surveillance, and immunization tracking at the population level with technology and community health workflows built around the interoperability, compliance, and configuration that government-adjacent organizations require.
Trusted by State Health Agencies Across the Country
TENNESSEE DEPT. OF HEALTH (TDH)
TDH selected Juno EHR to replace a legacy EHR across its network of public health clinics statewide.
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IDAHO DEPT. OF HEALTH & WELFARE
Idaho DH&W implemented Juno EHR to modernize clinical documentation and streamline public health reporting workflows.
NEW YORK OFFICE OF MENTAL HEALTH
NY OMH uses Juno EHR to support integrated care documentation across government mental health facilities.
Meet Your Reporting Requirements—Out of the Box
HL7 FHIR-Based Data Exchange
Drive real-time, bidirectional data sharing with HIEs, immunization registries, and federal reporting systems. Juno EHR’s HL7 FHIR-native architecture for public health delivers the interoperability your agency needs to seamlessly collaborate with other entities without custom integrations or manual data entry.
Electronic Case Reporting (eCR)
Automating eCR in the EHR simplifies the process of reporting notifiable diseases to public health authorities. Juno EHR triggers eCR workflows at the point of care, so you can send structured reports to state and local health departments automatically. Eliminate time-consuming manual fax-and-phone reporting.
Syndromic Surveillance
Syndromic surveillance uses near-real-time clinical data to detect disease outbreaks before laboratory confirmation. Juno EHR connects to state syndromic surveillance systems, automatically transmitting data about ED visits, symptom clusters, and other unusual patterns that public health authorities need to monitor community health trends.
Immunization Registry Integration
Juno EHR’s HL7 FHIR architecture supports bidirectional connectivity with state immunization information systems (IIS). Query and update immunization records in real time to relieve reporting burdens through automation and drive data-driven decisions to support community vaccination.
Promoting Interoperability/Meaningful Use
FQHCs and health centers participating in U.S. Centers for Medicare & Medicaid Services’ Medicare Promoting Interoperability Program must meet specific public health reporting objectives. Juno EHR is designed to support key measure reporting, including electronic prescribing, public health registry submissions, and clinical data exchange.
Frequently Asked Questions About Public Health EHR Software
A public health EHR helps agencies track community health trends by facilitating disease monitoring, vaccine tracking, and compliance reporting on a population scale. A dedicated public health EHR includes specific configurations and interoperability that government-affiliated health organizations need to monitor healthcare.
Juno EHR automates notifications for reportable diseases at the point of care to support electronic case reporting. Health organizations can seamlessly transmit structured data to local and state authorities to reduce manual reporting and share the most up-to-date insights.
Yes, Juno EHR is ONC certified. The software is also fully accredited in accordance with several top healthcare standards, including HITECH, Drummond, ISO 9001, HIPAA, and SOC 2 Type 2.
Juno EHR is equipped to handle eCR, syndromic surveillance, and UDS reporting. The software assists participating health centers in fulfilling the objectives of the Medicare Promoting Interoperability Program.
Yes, Juno EHR provides bidirectional synchronization with state IIS. Its HL7 FHIR architecture enables providers to access and modify vaccine records in real time and automates reporting to aid in population-level vaccination efforts.
Yes, Juno EHR is a fully cloud-based platform for faster deployments. This modern architecture ensures secure accessibility from anywhere to enhance workflow efficiency and meet clinical needs.
State and county health departments and mental health systems trust Juno EHR. The software is built to support a wide variety of public health organizations, including FQHCs and community clinics.
By Public Health Experts, For Public Health Organizations
Juno Health was built with input from the public health clinicians, IT directors, and health informatics leaders who use it every day. See why state health departments and FQHCs trust Juno to power their care delivery.
By clinicians, for clinicians
Built just for you. Transform the way you deliver exceptional patient care. Speak with a member of our team today to learn how Juno Health’s EHR solutions can help.
